Biophysical Society 2020 Annual Meeting

Membrane Protein Dynamics II (Boards B42 - B62)

1758-Pos Board B28 FLUORESCENT STUDY ON TETANUS NEUROTOXIN. Pierce ONeil , Alexey Ladokhin, Liskin Swint-Kruse, Michael Baldwin Protein Structure, Prediction, and Design II (Boards B29 - B41) 1759-Pos Board B29 A DUAL-LIGAND-MODULABLE FUNCTIONAL PROTEIN BASED ON LIGAND- INDUCIBLE GREEN FLUORESCENT PROTEIN AND CALMODULIN. Yoh Shitashima , Atsushi Miyawaki 1760-Pos Board B30 Travel Awardee COMPUTATIONAL DESIGN OF PEPTIDES BOUND TO THE MAJOR HISTO- COMPATIBILITY COMPLEX CLASS II. Rodrigo Ochoa , Alessandro Laio, Pilar Cossio 1761-Pos Board B31 COMPUTATIONAL DESIGN OF TRANSMEMBRANE PEPTIDES THAT BIND AND INHIBIT THE ERYTHROPOIETIN RECEPTOR. Marco Mravic , William Board B33 RANKING DOCKING MODELS BY COEVOLUTION ANALYSIS.  José Fiorote 1764-Pos Board B34 APPLICATION OF DOCKING TO PROTEIN MODELS. Amar Singh , Taras Dauzhenka, Petras Kundrotas, Michael J.E. Sternberg, Ilya Vakser 1765-Pos Board B35 INSIGHTS INTO POLYREACTIVITY VIA HIGH-THROUGHPUT BIOPHYSICAL CHARACTERIZATION OF ANTIBODY SEQUENCES. Christopher T. Boughter , Marta T. Borowska, Benoit Roux, Erin J. Adams 1766-Pos Board B36 SEMI-EXPLICIT SOLVATION IMPROVES LIGAND BINDING SITE DESIGN IN AN ALLOSTERIC PROTEIN. Zion R. Perry , Anum A. Glasgow, Tanja Kortemme 1767-Pos Board B37 FLEXIBLE DOCKING BETWEEN ENZYME AND ITS INHIBITOR USING MUL- TICANONICAL MD SIMULATIONS AND BINDING FREE ENERGY CALCULA- TIONS. Narutoshi Kamiya , Gert-Jan Bekker 1768-Pos Board B38 IMPROVING THE SPEED AND GENERALITY OF MACHINE LEARNING AP- PROACHES TO LIGAND-BINDING PROTEIN DESIGN. Andrew Tao , Emilia Pecora de Barros, Rommie E. Amaro 1769-Pos Board B39 INSIGHTS IN THE BINDING MECHANISM OF GC7 IN SULFOLOBUS SOL- FATARICUS : TOWARD THE DESIGN OF NEW INHIBITORS OF THE DEOXY- HYPUSINE SYNTHASE. Mattia D’Agostino , Alice Romagnoli, Daniele Di Marino, Anna La Teana 1770-Pos Board B40 BIG DATA FROM SPARSE DATA: DIVERSE SCIENTIFIC BENCHMARKS REVEAL OPTIMIZATION IMPERATIVES FOR IMPLICIT MEMBRANE ENERGY FUNCTIONS. Rebecca F. Alford , Jeffrey J. Gray 1771-Pos Board B41 INACCURACIES IN CIRCULAR DICHROISM SPECTROSCOPY BASED SEC- ONDARY STRUCTURE ESTIMATES. Gabor Nagy , Helmut Grubmueller DeGrado 1762-Pos Board B32 ANALYSIS OF SOFTWARE METHODS FOR ESTIMATION OF PROTEIN- PROTEIN RELATIVE BINDING AFFINITY. Kyle Martin , Jagdish Patel, Tawny Gonzalez 1763-Pos

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1772-Pos Board B42 CHARACTERIZING THE STRUCTURE OF STYRENE MALEIC ACID COPOLY- MER LIPID NANOPARTICLES (SMALPS) USING RAFT POLYMERIZATION FOR MEMBRANE PROTEIN SPECTROSCOPIC STUDIES. Benjamin D. Harding , Gunjan Dixit, Kevin M. Burridge, Gary A. Lorigan, Indra D. Sahu, Dominik Konkolewicz, Carole Dabney-Smith, Richard Edelmann 1773-Pos Board B43 STUDYING STRUCTURAL AND DYNAMIC PROPERTIES OF KCNE3 IN VARIOUS MEMBRANE ENVIRONMENTS USING MOLECULAR DYNAMICS SIMULATION AND EPR SPECTROSCOPY. Alberto Perez Galende , Fathima Dhilhani Mohammed Faleel, Steven Alston, Gary A. Lorigan, Indra D. Sahu 1774-Pos Board B44 EFFECTS OF STYRENE-MALEIC ACID (SMA) COPOLYMER ON THE PHOTO- ACTIVATION MECHANISM OF RHODOPSIN. Stephanie G. Pitch , Istvan Szundi, Weekie Yao, Eefei Chen, David L. Farrens, David S. Kliger 1775-Pos Board B45 Travel Awardee STRUCTURE-FUNCTION ANALYSIS OF E-CADHERIN DIMERIZATION AT THE PLASMA MEMBRANE. Vinh H. Vu , Taylor P. Light, Kalina Hristova, Deborah E. Leckband 1776-Pos Board B46 INVESTIGATING THE BAMA MECHANISMWITH THIOL-REACTIVE PROBE LABELING. Stephen Upton 1777-Pos Board B47 ACTIVE RHODOPSIN CHROMOPHORE CONFORMATION REVEALED BY SOLID-STATE 2 H NMR AND QM/MM SIMULATIONS. Andrey V. Struts, Xiaolin Xu, Trivikram R. Molugu, Suchithranga M. Perera, Samira Faylough, Charitha Guruge, Carolina L. Nascimento, Mikhail N. Ryazantsev, Michael Board B48 CONFORMATIONAL DYNAMICS OF FULL LENGTH RAS ON THE MILLISEC- OND TIMESCALE. Chris Neale , Angel E. Garcia 1779-Pos Board B49 Travel Awardee MOLECULAR MECHANISMS OF ION SELECTIVITY IN POTASSIUM CHAN- NELS. Marcos Matamoros , Sun Joo Lee, Shizhen Wang, Colin G. Nichols 1780-Pos Board B50 CHOLESTEROL AND PATCHED1: MD SIMULATION STUDIES.  T. Bertie Ansell , Christian Siebold, Mark S. Sansom 1781-Pos Board B51 LATERAL GATE OPENING OF BAM COMPLEX STUDIED BY FREE ENERGY CALCULATIONS AND THE STRING METHOD. Yui Tik Pang , David Ryoo, Zijian Zhang, Karl Lundquist, James C. Gumbart 1782-Pos Board B52 HOW GLYCOSYLATION AFFECTS CONFORMATIONAL DYNAMICS AND SMALL MOLECULE BINDING ON INFLUENZA NEURAMINIDASE. Christian Seitz 1783-Pos Board B53 PHYSICAL PROPERTIES OF CLAUDIN-15 STRANDS IN TIGHT JUNC- TIONS. Shadi Fuladi , Christopher Weber, Fatemeh Khalili-Araghi 1784-Pos Board B54 THE MULTIVALENT DYNAMICS OF RAF RBD-CRD ON MEMBRANES - EN- HANCED AFFINITY DUE TO RECRUITMENT OF ANIONIC LIPIDS. Timothy S. Travers, Cesar A. Lopez, Constance Agamasu, Jeevapani J. Hettige, Angel E. Garcia, Andrew G. Stephen, Sandrasegaram Gnanakaran F. Brown 1778-Pos

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