Biophysical Society 61st Annual Meeting | Program Guide

Molecular Dynamics II (Boards B473–B483) 1405-Pos Board B473 INVESTIGATING THE INFLUENCE OF SEQUENCE ON PROTEIN FOLDING MECHANISM USING A STRUCTURE BASED MODEL. Elizabeth Gichana , Charles L. Brooks III 1406-Pos Board B474 MODULATION OF PROTEIN FLEXIBILITY WITH CHANGES IN SEQUENCE AND COMPLEXATION STATE OF UBIQUITIN FAMILY PROTEINS. Sanjoy Paul 1407-Pos Board B475 CHARACTERIZATION OF PROFILIN BINDING KINETICS USING ENSEMBLE MOLECULAR DYNAMICS SIMULATIONS.  Jocelyn Sunseri , David R. Koes, Partha Roy, David Gau 1408-Pos Board B476 EXPLORING MOLECULAR INTERACTIONS BETWEEN ESCHERICHIA COLI RNA POLYMERASE AND TOPOISOMERASE I BY MOLECULAR SIMULA- TIONS. Purushottam Tiwari , Prem Chapagain, Srikanth Banda, Yesim Darici, Yuk-Ching Tse-Dinh, Aykut Üren 1409-Pos Board B477 COMPUTATIONAL STUDY ON A VARIETY OF PATHWAYS FOR CONFORMA- TIONAL CHANGES OF A PROTEIN. Sotaro Fuchigami 1410-Pos Board B478 MOLECULAR DYNAMICS STUDY FOR STREPTAVIDIN MUTANT WITH/ WITHOUT BIOTIN ANALOG. Keiko Shinoda , Hideaki Fujitani 1411-Pos Board B479 DEPENDENCE OF WATER EXCHANGE KINETICS ON THE SIZE AND CHARGE OF METAL ION. Yuno Lee , Devarajan Thirumalai, Changbong Hyeon 1412-Pos Board B480 ANISOTROPY IMAGING OF APOLLO-NADP+ IN VIVO TO TRACK NADPH DYNAMICS IN THE PANCREATIC BETA CELLS OF LIVING ZEBRAFISH. Cindy V. Bui , Curtis W. Boswell, Christopher M. McFaul, Christopher M. Yip, Brian Ciruna, Jonathan V. Rocheleau 1413-Pos Board B481 MONITORING THE INTERCALATION OF ACRIDINE ORANGE (AO) MOL- ECULES INTO 6-METHYL ISOXANTHOPTERIN (6-MI)-LABELED DNA BY CIRCULAR DICHROISM AND SINGLE-MOLECULE FRET. Huiying Ji , Neil P. Johnson, Peter H. von Hippel, Andrew H. Marcus 1414-Pos Board B482 RECONSTRUCTION OF THREE-DIMENSIONAL STRUCTURES OF A PROTEIN WITH SOFTWARE ENMA AND EMC ALGORITHM: A SIMULATION FOR XFEL-CXDI EXPERIMENT. Takashi Yoshidome , Yuki Sekiguchi, Tomotaka Oroguchi, Masayoshi Nakasako, Mitsunori Ikeguchi 1415-Pos Board B483 ELUCIDATING THE MACROMOLECULAR CROWDING EFFECTS ON INTRA- CELLULAR NADH AND ENZYME BINDING USING TIME-RESOLVED ASSOCI- ATED ANISOTROPY. Shane Wilson , Tylor Franklin, Ryan Leighton, Robert Kajer, Ahmed A. Heikal Computational Methods and Bioinformatics I (Boards B484–B511) 1416-Pos Board B484 CHARMM-GUI LIGAND READER & MODELER. Seonghoon Kim , Jumin Lee, Sunhwan Jo, Wonpil Im 1417-Pos Board B485 MOLECULAR DYNAMICS SIMULATION WORKFLOW FOR NUCLEOSOME STUDIES. Ran Sun , Zilong Li, Thomas C. Bishop

1418-Pos Board B486 EVALUATING MOLECULAR MECHANICS FORCE FIELDS WITH A QUANTUM CHEMICAL APPROACH. David Koes , John Vries 1419-Pos Board B487 ONE CONSTRAINT AT A TIME: USING VIABILITY PRINCIPLES IN INTEGRA- TIVE MODELING OF MACROMOLECULAR ASSEMBLIES. Giorgio E. Tamo , Andrea Maesani, Sylvain Traeger, Matteo Thomas Degiacomi, Dario Floreano, Matteo Dal Peraro 1420-Pos Board B488 A BALANCED APPROACH TO ADAPTIVE DENSITY ESTIMATION IN BIO- PHYSICAL ANALYTICS.  Julio A. Kovacs , Willy Wriggers 1421-Pos Board B489 MECHANISM BEYOND MARKOV MODELS: HISTORY INFORMATION IS NEEDED FOR UNBIASED PATHWAY RECONSTRUCTION OF PROTEIN FOLD- ING. Ernesto Suárez , Joshua L. Adelman, Daniel M. Zuckerman 1422-Pos Board B490 FINDING DOMINANT REACTION PATHWAYS VIA GLOBAL OPTIMIZATION OF ACTION.  Juyong Lee , In-Ho Lee, InSuk Joung, Jooyong Lee, Bernard R. Brooks 1423-Pos Board B491 INTERACTIVE CHROMATIN MODELING WITH GENOME BROWSER. Zilong Li , Ran Sun, Thomas C. Bishop 1424-Pos Board B492 A NEWMETHOD TO PREDICT THE ELECTRONIC CIRCULAR DICHROISM SPECTRA OF PROTEINS. Gabor Nagy, Gabor Nagy , Helmut Grubmueller 1425-Pos Board B493 IMAGING LOCALIZED FORCE DISTRIBUTIONS IN CELLS AND TISSUES FROM SUBSTRATE DISPLACEMENTS.  Joshua C. Chang , Tom Chou 1426-Pos Board B494 INTERACTION SURFACES OF PROTEINS INVOLVED IN BACTERIAL CHEMO- TAXIS WITH RIGID-BODY DOCKING DECOYS. Nobuyuki Uchikoga , Yuri Matsuzaki, Masahito Ohue, Yutaka Akiyama 1427-Pos Board B495 A PRELIMINARY NORMAL MODE ANALYSIS OF A SUGAR TRANSPORTER VSGLT.  John E. Cabrera , Claudia A. Blanco, Yuly E. Sánchez 1428-Pos Board B496 PREDICTING SMALL MOLECULE-BINDING TO DNA WITH COMPUTA- TIONAL DOCKING AND EMPIRICAL ENTROPIC CONTRIBUTIONS. Christos Deligkaris , GWMcElfresh 1429-Pos Board B497 TOWARDS IN-SILICA SCREENING OF MOLECULE PERMEATION THROUGH OUTER MEMBRANE CHANNELS IN GRAMM-NEGATIVE BACTERIA.  Igor V. Bodrenko , Silvia Acosta-Gutierrez, Tommaso D’Agostino, Samuele Salis, Susruta Samanta, Mariano Andrea Scorciapino, Matteo Ceccarelli 1430-Pos Board B498 ON THE ROBUSTNESS OF SAC SILENCING IN CLOSED MITOSIS.  Donovan P. Ruth , Jian Liu 1431-Pos Board B499 COMPUTATIONAL ANALYSIS OF THE MECHANISM OF THE UBIQUITIN CONJUGATING ENZYME UBC13. Walker M. Jones , Aaron Davis, Isaiah Sumner, Serban Zamfir 1432-Pos Board B500 PHYSICAL BINDING OF A TOBACCO-SPECIFIC CARCINOGEN (NNK) ME- TABOLITE TO THE HUMAN TP53 GENE WITH RAMIFICATIONS FOR DNA DAMAGE AND MUTATIONS. Breanna S. Stirewalt , Christos Deligkaris

M O N D A Y

83

Made with FlippingBook flipbook maker