Emerging Concepts in Ion Channel Biophysics

Emerging Concepts in Ion Channel Biophysics

Poster Abstracts

57-POS Board 57 Computational Investigation of Hexamer and Tetramer Assemblies of Orai Subunits Tugba N. Ozturk 1,2 , Guillaume Lamoureux 1,2,3 . 1 Concordia University, Montreal, QC, Canada, 2 Concordia University, Montreal, QC, Canada, 3 Concordia University, Montreal, QC, Canada. In many cell types, the depletion of intracellular calcium stores triggers a specific form of calcium influx called store-operated calcium entry, which is crucial for the activation of immune cells and the function of several cell types. In mast cells, store-operated calcium entry is carried by calcium release-activated calcium (CRAC) channels. Orai proteins form the pore subunit of CRAC channels whereas Stromal interaction molecules (STIM) act as sensors for the intracellular calcium stores. Although it has been suggested that the functional form of CRAC channels is a tetramer assembly of Orai subunits, the recent crystal structure of the Orai protein [Hou et al., Science 338, 1308 (2012)] exhibits a hexamer assembly with a threefold, quasi-sixfold axial symmetry around the ion pore of the channel [Thompson and Shuttleworth, Sci. Rep. 3, 1961 (2013)]. In addition, the open state of Orai channels is unknown. In this study, we analyzed the stability and the packing of hexamer and tetramer Orai calcium channels using all-atom molecular dynamics simulations . We modelled the tetramer assembly of Orai subunits based on the hexameric crystal structure. Our results indicate that the tetramer Orai model retains most of the structural features of the hexamer channel, even though the residue- residue contact analysis reveals a packing less tight than for the Orai hexamer. The tetramer channel displays a narrower pore containing fewer water molecules, which affects the solvation of permeant ions. We also computed the free energy profiles of calcium, potassium and sodium ions permeating through the pore of Orai channel models built with the pore-lining helices in conformations suggested to be the active form of the channel [Yamashita et al., Nat Commun. 8, 14512 (2017)].

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