BPS2025 Full Program

1183-Pos Board B190 EXPLORING THE ENTIRE CONFORMATIONAL SPACE OF G-QUADRUPLEX ES: INSIGHTS INTO FOLDING BARRIERS IN LOOPING TOPOLOGIES. Michal Jurkowski , Mateusz Kogut, Jacek Czub 1184-Pos Board B191 PROBING MECHANICAL SELECTIONTHROUGH ACCURATE PREDICTION OF 3D DNA MECHANICS. Jonghan Park, Sophia Yan, Jingzhou Hao , Tingwei Liao, Taekjip Ha 1185-Pos Board B192 THE EFFECT OF TRINUCLEOTIDE EXTRUSIONS ON DNA LOOPING. Jack son Anderson, Leah Smith, Brian L. Cannon 1186-Pos Board B193 MOLECULAR DYNAMIC SIMULATIONS OF HETEROCHIRALDNA JUNC TIONS. Alexander Baten , William P. Bricker 1187-Pos Board B194 AN UNDER-OVER DSDNA TOPOLOGY IN HERPESVIRUS VIRION SUG GESTS A TORSIONAL PRELOAD-BASED MECHANISM OF GENOME COM PACTION. Jonathan Jih , Yuntao Liu, Lenka Milojevic 1188-Pos Board B195 INTRAMOLECULAR DNA THREE-WAY JUNCTIONS: THERMODYNAMIC LOOP CONTRIBUTIONS. Irine Khutsishvili, Luis A. Marky 1189-Pos Board B196 G-QUADRUPLEX RECOGNITION BY TETRAALKYLAMMONIUM IONS: A NEW PARADIGM FOR DISCRIMINATION BETWEEN PARALLEL AND ANTIPARALLEL G-QUADRUPLEXES. Xuan Li, David N. Dubins, Jens Volker, Tigran V. Chalikian 1190-Pos Board B197 IMAGE-BASED ANALYSIS OF THE GENOME’S FRACTALITY DURING THE CELL CYCLE. Suho Lee , Xutong Liu, Ivan Ziabkin, Alexandra Zidovska 1191-Pos Board B198 EFFECTS OF NON-RANDOM SPECIFIC INTERACTIONS ON GENOME ORGANIZATION OF E. COLI. Pourya Delafrouz , Lin Du, Hammad Farooq, Jie Xiao, Jie Liang 1192-Pos Board B199 STRAND STORIES - UNDERSTANDING SSDNA DYNAMICS USING ALL-AT OM MD SIMULATIONS GUIDED VIA HIGH THROUGHPUT FRET. Hemani Chhabra , Sung Hyun Kim, Chirlmin Joo, Aleksei Aksimentiev 1193-Pos Board B200 SINGLE-MOLECULE BIODOSIMETRY. Michael Lamontagne , Joseph W. Robertson, Michael Zwolak 1194-Pos Board B201 SIMULATING CHROMOSOME DYNAMICS IN A MINIMAL BACTERIAL CELL. Andrew K. Maytin , Benjamin R. Gilbert, Zane R. Thornburg, Zaida Luthey-Schulten 1195-Pos Board B202 NUCLEOSOME PLACEMENT AND POLYMER MECHANICS EXPLAIN GENOMIC CONTACTS ON 100KBP SCALES. John Corrette , Jiachun Li, Hanjuan Shao, Praveen K. Veerasubramanian, Andrew J. Spakowitz, Timothy L. Downing, Jun F. Allard 1196-Pos Board B203 VERTICAL NUCLEIC ACIDS ON GRAPHENE: DYNAMIC STRUCTURAL BIOL OGY WITH ANGSTROM RESOLUTION. Lars Richter 1197-Pos Board B204 BENDING UNWINDS DNA. Soumya Chandrasekhar, Thomas Swope, Fatemeh Fadaei, Daniel Hollis, Rachel Bricker, Draven Houser, John J. Portman, Thorsten L. Schmidt

1198-Pos Board B205 MECHANISMS FOR SUGAR PUCKERING TO GOVERN RNA-GUIDED DNA SYNTHESIS BY REPAIRING DNA POLYMERASES. Jeanpierre Fuente 1199-Pos Board B206 UNRAVELLING THE EFFECT OF DIVALENT SALT ON THE STRUCTURE OF NEGATIVELY SUPERCOILED DNA. Aleksander Klimczyk, Dorothy Aboagye-Mensah, Graeme A. King 1200-Pos Board B207 TRANSCRIPTION-DEPENDENT MOBILITY OF SINGLE GENES AND GENOME-WIDE MOTIONS IN LIVE HUMAN CELLS. Fang-Yi Chu, Alexis S. Clavijo, Suho Lee, Alexandra Zidovska Protein-Nucleic Acid Interactions II (Boards B208 - B223) 1201-Pos Board B208 ASSESSING THE FUNCTION OF SNAP-LABELED CLEAVAGE AND POLY ADENYLATION FACTORS USING COLOCALIZATION SINGLE MOLECULE SPECTROSCOPY. Connor I. White , Ethan Aubuchon, Aaron A. Hoskins 1202-Pos Board B209 FUNCTIONAL DIVERGENCE OF FXR AND LXR FROM THEIR COMMON ANCESTOR. Nishanti Sudhakar , Denise Okafor 1203-Pos Board B210 MICROMECHANICAL ANALYSES OF METHYLATED HISTONES USING TRANSVERSE MAGNETIC TWEEZERS. Rajendra Bhandari , Santosh Gaire, Ian L. Pegg, Abhijit Sarkar 1204-Pos Board B211 SINGLE-MOLECULE ANALYSIS TO VISUALIZE THE DIRECT INTERACTION OF PROTEINS AND DNA. Nastaran Hadizadeh Yazdi , Trey Simpson, Sheema Rahmanseresht, Paul Pease 1205-Pos Board B212 MOLECULAR DYNAMICS SIMULATIONS OF THE INTERPLAY OF MIRNA TARGET INTERACTIONS. Ukesh Karki , Prem P. Chapagain 1206-Pos Board B213 MEASURING THE KINETICS OF DNA CLEAVAGE BY ECORI IN THE PRES ENCE OF OSMOLYTES. Allen C. Price , Krysten Rafferty 1207-Pos Board B214 STRUCTURE-FUNCTION ANALYSIS OF THE BDNF MRNA G-QUADRUPLEX AS A NOVEL REGULATOR OF ADULT HIPPOCAMPAL NEUROGENESIS. Rosalia Palumbo , Mihaela-Rita Mihailescu 1208-Pos Board B215 EXPERIMENTALLY VERIFYING THE KNOB-SOCKET MODEL OF BZIP-DNA BINDING SPECIFICITY IN CREB AND C/EBPA. Margit G. Klemer De Lasse , Kalee Thao, Aaron Tran, Hyun Joo, Jerry Tsai 1209-Pos Board B216 INVESTIGATION OF THE MUTSA INTERACTION WITH RECOMBINA TION INTERMEDIATES: AN ALTERNATE BINDING MECHANISM? Andrea Jimenez-Benitez 1210-Pos Board B217 SINGLE-MOLECULE MEASUREMENTS OF P44-ENHANCED XPD HELICASE ACTIVITY. Connor Nance , Chunfeng Mao, K. Maria Mills 1211-Pos Board B218 EXTENSIVE MOLECULAR DYNAMICS SIMULATIONS REVEAL THE CRITICAL ROLE OF INTRINSICALLY DISORDERED REGIONS OF HUMAN APURINIC/ APYRIMIDINIC ENDONUCLEASE IN DIFFUSION MECHANISMS. Gyeongpil Jo , Jejoong Yoo

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