Biophysical Society 65th Annual Meeting Program Guide

1058-Pos B oard B108 EXAMINING THE EFFECTS OF NETROPSIN ON THE MOBILITY OF DNA US- ING CAPILLARY ELECTROPHORESIS. Jillian Miller , Justin P. Peters 1059-Pos B oard B109 CONFORMATION OF IMMUNE STIMULATORY SINGLE STRANDED DNA BY BIOMOLECULAR SIMULATIONS AND NMR. Barna Tóth, Krisztina Fehér 1060-Pos B oard B110 VOLUMETRIC INTERPLAY BETWEEN THE CONFORMATIONAL STATES AD- OPTED BY DNA STRANDS FROM THE PROMOTER REGION OF THE C-MYC ONCOGENE. Lutan Liu , Lily Scott, Takuma Kume, Tigran V. Chalikian 1061-Pos B oard B111 DETERMINING LOCAL CONFORMATIONS AND CONFORMATIONAL DIS- ORDER AT AND NEAR SINGLE-STRANDED (SS) AND DOUBLE-STRANDED (DS) DNA FORKS AND JUNCTIONS. Dylan Heussman , Patrick J. Herbert, Jack W. Maurer, Justin Kittell, Amr Tamimi, Tom Steinberg, Peter H. von Hippel, Andrew H. Marcus 1062-Pos B oard B112 CONNECTING STRUCTURE WITH KINETICS OF SINGLE-STRANDED DNA FLUCTUATIONS THAT PROVIDE POTENTIAL BINDING SITES FOR REPLICA- TION PROTEINS. Claire Albrecht , Brett A. Israels, Chloe Chvatal, Peter H. von Hippel, Andrew H. Marcus 1063-Pos B oard B113 ANHARMONIC BENDING OF DNA BASE-PAIR MISMATCH. Michael L. Ryan , Jiyoun Jeong, Tony Lemos, Harold D. Kim 1064-Pos B oard B114 BENDING FLUCTUATIONS IN MISMATCHED DNA REVEALED BY FLUORES- CENCE CORRELATION SPECTROSCOPY. Timour B. Ten , Viktoriya Zvoda, Manas K. Sarangi, Anjum Ansari 1065-Pos B oard B115 THE DYNAMIC ENSEMBLE OF A:G AND A:8-OXOGUANINE MISMATCHES IN DUPLEX DNA: IMPLICATIONS FOR REPLICATION ERRORS AND DAM- AGE REPAIR. Stephanie Gu , Eric S. Szymanski, Atul Kaushik Rangadurai, HashimM. Al-Hashimi 1066-Pos B oard B116 THERMODYNAMIC PARAMETERS AND DESIGN CONSIDERATIONS FOR EXPANDED ALPHABET P-Z AND G-Z BASE PAIRS IN DNA. Jason D. Kahn , Terrel Miffin, Kenneth K. Sharp, Xiaoyu Wang, Shuichi Hoshika, Hongy- ing Sun, Mingyi Zhu, Tuan M. Pham, Raymond J. Peterson, Steven A. Benner, David H. Mathews 1067-Pos B oard B117 NUCLEIC ACID CONFORMATIONAL PENALTIES FROM OPTICAL MELTING EXPERIMENTS. Atul Kaushik Rangadurai , Honglue Shi, Yu Xu, Bei Liu, HashimM. Al-Hashimi 1068-Pos B oard B118 KINETICS OF DNA MELTING AND ANNEALING UNDER SMALL TEN- SION. Derek Hart 1069-Pos B oard B119 CORRELATIVE SINGLE-MOLECULE FORCE-FRET MEASUREMENTS OF DNA HAIRPIN CONFORMATIONAL DYNAMICS. Nastaran Hadizadeh Yazdi , Jordi Cabanas-Danés, Sheema Rahmanseresht, Ann Mukhortava, Rosalie P.C. Driessen, Ali Raja 1070-Pos B oard B120 FIRST PASSAGE TIME STUDY OF DNA STRAND DISPLACEMENT. Alexander W. Cook , Bo Broadwater, Harold D. Kim 1071-Pos B oard B121 HOW THE CIRCULAR AND LINEAR CONFORMATIONAL FLUCTUATIONS OF GIANT DNA MOLECULES CHANGE WITH THE VISCOSITY OF THE SOLVENT. Masato Tanigawa , Takafumi Iwaki

1072-Pos B oard B122 RESTRICTED MOBILITY AND JAMMING OF DENSELEY PACKED DNA PULLED OUT FROM PHAGE PHI29 VIRUS CAPSIDS. Mounir Fizari , Nicho- las A. Keller, Douglas E. Smith 1073-Pos B oard B123 SHAPE AND SEDIMENTATION COEFFICIENTS OF SUPERCOILED DNA MINICIRCLES. Radost Waszkiewicz , Maciej Lisicki, Daniel J. Catanese, Jonathan Fogg, Magdalena Gruziel, Maria L. Ekiel-Jeżewska, Borries Demeler, E. Lynn Zechiedrich, Piotr Szymczak 1074-Pos B oard B124 INFLUENCE OF DNA LENGTH ON SUPERCOILING-DEPENDENT 3-D SHAPE. Nathan Corman , Cecilia Quijano, Jonathan Fogg, B. Montgom- ery Pettitt, E. Lynn Zechiedrich 1075-Pos B oard B125 SUPERCOILING AND LOOPING PROMOTE DNA BASE ACCESSIBILITY AND COORDINATION AMONG DISTANT SITES. Jonathan M. Fogg , Allison Judge, Erik Stricker, Hilda L. Chan, E. Lynn Zechiedrich 1076-Pos B oard B126 BIPHASIC EFFECT OF POLYAMINES ON GENE EXPRESSION IN RELA- TION TO THE SPECIFIC CHANGE OF THE HIGHER-ORDER STRUCTURE OF DNA. Tomoki Kitagawa , Takashi Nishio, Naoki Umezawa, Tsunehiko Higuchi, Yuko Yoshikawa, Takahiro Kenmotsu, Kenichi Yoshikawa 1077-Pos B oard B127 GENERATING CHROMOSOME GEOMETRIES AT THE SINGLE-CELL LEVEL FROM CRYO-ELECTRON TOMOGRAMS. Benjamin R. Gilbert , Zane R. Thornburg, Vinson Lam, Elizabeth Villa, Fatema Zahra M. Rashid, Remus T. Dame, Zaida Luthey-Schulten 1078-Pos B oard B128 ACCURATE SEQUENCE-DEPENDENT COARSE-GRAINED MODEL FOR CONFORMATIONAL AND ELASTIC PROPERTIES OF DOUBLE-STRANDED DNA. Salvatore Assenza , Ruben Perez 1079-Pos B oard B129 CTAG VS. GATC: STRUCTURAL BASIS FOR REPRESENTATIONAL DIFFER- ENCES IN REVERSE PALINDROMIC DNA TETRANUCLEOTIDE SEQUENC- ES. Mahmoud Sharawy , Artemis Louyakis, Johann P. Gogarten, Eric R. May 1080-Pos B oard B130 ION BINDING TO THE BCL-2 G-QUADRUPLEX FROM POLARIZABLE SIMU- LATIONS WITH THE DRUDE FORCE FIELD. Brian D. Ratnasinghe , Alexa M. Salsbury, Justin A. Lemkul 1081-Pos B oard B131 COMPUTER SIMULATIONS OF NUCLEIC ACID CONDENSATION MECHA- NISM: THE ROLE OF INTERFACIAL CATIONS DISTRIBUTION. Weiwei He , Xiangyun Qiu, Serdal Kirmizialtin 1082-Pos B oard B132 TWO-PHASE DYNAMICS OF DNA SUPERCOILING BASED ON DNA POLY- MER PHYSICS MODEL. Biao Wan , Xinliang Xu, Jin Yu 1083-Pos B oard B133 TIME-LAPSE, LIVE-CELL IMAGING OF POTASSIUM EFFLUX IN CELL EXPOSED TO NANOSECOND PULSED ELECTRIC FIELDS. Flavia Mazzarda , Esin B. Sozer, Julia L. Pittaluga, Claudia Muratori, P. Thomas Vernier 1084-Pos B oard B134 SURFACE-ASSISTED FORMATION OF MODEL PROTOCELLS FROM FATTY ACID AND PHOSPHOLIPID MIXTURES. Inga Põldsalu , Elif S. Koksal, Irep Gozen Membrane Dynamics II (Boards B133 - B147)

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